PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025785
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 204aa    MW: 22246.5 Da    PI: 8.7776
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025785genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.94.5e-302103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l p++     p++q +++ +v+k+FG++ ++++++a+p+ +r+++++sl++eA  r+ +Pv+Gavg++++++++++q+++e
  DCAR_025785   2 SCNGCRVLRKGCSENCILQPCLqwiqtPEAQGHATVFVAKFFGRAGLMSFISAVPHPQRPALFQSLLFEAAGRTVNPVNGAVGLLSSGNWHICQAAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  DCAR_025785 100 TVLR 103
                  9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4951107IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-252101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILQ PCLQWIQTPE AQGHATVFVA KFFGRAGLMS FISAVPHPQR  60
PALFQSLLFE AAGRTVNPVN GAVGLLSSGN WHICQAAVET VLRGGALRPL TDLESSSSEC  120
TDILKLKDST STSRLRVEKR RRYEPEMKLP DPSPNFSGAN LPAKMTLEKR RSETPSRTSE  180
ESVTTSCYES GSGLREVKLL NLF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142EKRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231911.12e-88PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN112e-73LBD37_ARATH; LOB domain-containing protein 37
SwissprotQ9SZE81e-73LBD39_ARATH; LOB domain-containing protein 39
TrEMBLK4BD512e-88K4BD51_SOLLC; Uncharacterized protein
STRINGSolyc02g092550.2.15e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.16e-72LOB domain-containing protein 37